Category Archives: Salmon

Prey relationship talks

8:35 John Ford, resident KW foraging ecology

What may have caused the simultaneous declines in the N and S residents during the late 1990s?  Nutritional stress?

We compared expected and observed births and deaths, where expectations were based on period of unlimited growth (’73-’90).  There were two phases of increased mortality in adult/juvenile fe/males: late 90s for N and S, mid-80s for southern and A pods.

Sockeye outnumber Chinook by 1000x in areas where residents forage during the summer.  Yet Sockeye make up less than 1% of diet during sampling period (May-Oct).  Only adult males don’t bring prey (of all species) to the surface for sharing.  This indicates that our surface prey fragment sampling technique isn’t biased.  Additionally, sockeye swim shallow and Chinook deep, but we’ve only sampled 3 sockeye predation events.

Sub-adults show some preference for smaller fish like Pink and Chum that make up about about 20% of their diet.  Recent winter sampling show continued chinook preference: 2 samples in Jan from N residents; 2 from J pod near Nanaimo Chinook.  They didn’t see enhanced mortality in weaners (expected in mammals under nutritional stress), perhaps because of prey sharing. Mortality lags chinook abundance by 1 year.

The Chinook abundance index is a bit below average currently, so we expect high mortalities next year.  A research priority is to identify important Chinook stocks for whales (Brian Gisborn, Brad Hanson).  How many are hatchery fish?

9:01 Jennifer (for Brad), species and stock ID for southern residents

Goals were to supplement Ford’s prey samples (beyond J pod), to collect fecal/regurgitation samples (to avoid potential bias in surface fragment sampling), and to define foraging surface behavior.  We now have ~150 fecal samples and 250 foraging samples that have been analyzed genetically.

Feces were screened for rockfish, sole, starry flounder, pacific halibut,  Irish lords, herring, sculpin, sable fish, greenling, lingcod, cabezon, and squid.  Thus far, we have detected (rarely) rockfish, sole, Pacific halibut, and lingcod.

Prey sampling results — Steelhead may be imporant in May.  Chinook dominate from May-September.

Fecal sampling results — Chinook dominate in May-September, but Chum is also important in September.

Breakdown of Chinook stocks is based on GAPS database which gives genetic profile for each river from 20k sampled fish.  They appear to be eating Chinook in rough proportion to what is available (most dense by number? biomass?).

Future work is focused on bioenergetics (how many fish do they consume and do they impact the stocks?) and availability (Is background noise impeding foraging efficiency?).  We need samples in Sept-Dec and May!

Eric Ward, risk analysis

Developed a fecundity model which was age specific (the rate of maturity is much faster than rate reproductive senesence).  Extrinsic factors were prey, contaminants, anthropogenic events (oil spills).  Can’t assess oil spill risks and disease risks (due to lack of data), nor do extant data help us characterize the variability of fecundity between sub-populations (e.g. pods) and indivduals.

Used Pacific Fisheries Management Council (PFMC) indices (terminal run) from to characterize prey.  Also look at Pacific Salmon Commission (PSC) relative index.  Ballard locks was used to get a U.S. sockeye time series to compare with the big (25 million) Fraser sockeye runs.  Used ENSO and PDO time series to characterize climatic variability.

Is the SR production different from NR?  It looks similar (~90+% of NR production rate).  High probability of prey (Chinook) correlates highly w/fecundity.  Late run Fraser and Oregon coastal stocks are driving the correlation of the prey variable.

NOAA finds SRKWs offshore on day 4!

Just got an exciting email from Dr. Marla Holt, bioacoustician on the NOAA cruise that aims to understand how the southern residents utilize the outer coast of Washington. They departed last Monday and are scheduled to return April 9th, making for a significantly longer cruise than in past years.

Since big ocean-going research boats like the McArthur II cost on the order of $20k/day, it’s GREAT news that they have not only encountered L pod, but also obtained some information about what the orcas are eating. It will be fascinating to learn which fish they are consuming on the outer coast at this time of year…

NOAA R/V McArthur II

Marla writes:

Things are going really well.  We found L pod on the 4th day at sea!!! The NOAA ship McArthur II detected all of L pod just north of Grays Harbor, WA in the middle of the night last night (~0330 March 26). We lost them acoustically but then found them visually and acoustically in the mid morning and were able to deploy the small boat (RHIB).  The whales were spread out and traveling south most of the day.  Brad and the rest of the crew got photo IDs and some prey samples, stayed with them day until 1830.  Last visual sighting was at dusk when they grouped back up and became quiet. Hopefully we will stick with them through the night to get more samples tomorrow (3/27).

Congrats to Brad, Marla, and the rest of salty surveillance team!

Strong spring chinook run on the Columbia

Here we are in mid-February, a couple weeks into the blackmouth opening in the Salish Sea, and WDFW is opening up recreational fishing for spring (winter?) Chinook running in the Columbia [see today’s email announcement below].  This makes me wonder where the southern residents are at the moment and what the run timing looks like for California Rivers, coastal OR rivers, and the Fraser.  Why in the world isn’t a simple Gantt diagram for this famous phenomena!?

This is the first time I’ve gotten a sense of when the spring run gets going and it’s earlier than I expected.  Yesterday Sam Wasser showed us some plots that suggest that southern residents are about as well fed as they are all summer when they first show up in ~June.  That got me wondering whether Fred Felleman is right — that their main source of annual sustenance is the really big, oily spring Chinook destined for the highest parts of the biggest river systems (and fisher’s dinner tables, now).

WDFW NEWS RELEASE

February 12, 2009
Contact:  WDFW Region 5 Office, (360) 906-6708

Columbia River spring chinook season reflects projection of strong runs

OLYMPIA – Anglers will be able to fish for spring chinook salmon from the mouth of the Columbia River to Bonneville Dam through mid-April under initial seasons adopted Wednesday, Feb. 11, by fishery managers from Washington and Oregon.  Anticipating a strong run of spring chinook to the upper Columbia River and improved returns to the Willamette, the two states agreed to provide significantly more days of fishing – particularly below Hayden Island – than last year.

According to the pre-season forecast, nearly 300,000 upriver spring chinook are expected to enter the Columbia River this year, which would make this year’s return the third highest since 1977.  An additional 37,000 “springers” are also expected to return to the Willamette River, up from 27,000 last year.

“This is shaping up to be a very good year for spring chinook fishing in the Columbia River,” said Cindy LeFleur, Columbia River policy coordinator for the Washington Department of Fish and Wildlife (WDFW).  “The first fish have just begun to arrive, and we hope to see a lot more of them in the months ahead.”

Below Hayden Island, the new season provides 30 days of spring chinook fishing in March and April, compared to just 12 days last year.  During those two months, anglers also will have 39 days – up from 36 days last year – to catch and retain spring chinook from Hayden Island upriver to Bonneville Dam.

LeFleur noted that the fishery could extend beyond April, but that late-season regulations have not been set because of differences between the fish and wildlife commissions of Washington and Oregon over how to allocate the catch.

In March and April, Columbia River anglers will be able to fish for spring chinook salmon at the following locations and times:

* West power lines on Hayden Island downstream to Buoy 10:   Seven days per week from March 1-15.  Beginning March 16 through April 18, fishing will be limited to three days per week, Thursdays through Saturdays.
* West power lines on Hayden Island to Bonneville Dam:   Seven days per week from March 1-22.  Beginning March 23 through April 22, fishing will be limited to four days per week, Wednesday through Saturday.
* Tower Island power lines above Bonneville Dam to McNary Dam:   Seven days per week from March 16 through April 30.  The Washington and Oregon bank fishery will also be open from Bonneville Dam upstream to the Tower Island power lines.

Until March 1, the spring chinook fishing is open under regulations described in the 2008-09 Fishing in Washington rule pamphlet (good until April 30, 2009).  Anglers fishing for spring chinook salmon may also retain shad and hatchery steelhead, as outlined in the rule pamphlet.

In all areas, anglers are required to release any chinook salmon not clearly marked as a hatchery-reared fish, since a portion of the wild upriver spring chinook run is protected under the federal Endangered Species Act.  Unmarked steelhead must also be released.  Hatchery fish can be identified by a clipped adipose fin with a healed scar.

Under a new rule approved by the Washington commission, anglers fishing below McNary Dam may retain two hatchery-reared adult salmon or steelhead (or one of each) per day.  However, only one adult chinook salmon may be retained per day downstream from Bonneville Dam.

LeFleur noted that standing rules limit incidental mortality of wild spring chinook intercepted and released in all state fisheries – recreational and commercial – to 2.2 percent of the total run.   “It’s essential that anglers observe the rules requiring the release of wild salmon and steelhead,” LeFleur said.  “Our ability to continue these fisheries depends on it.”

Juvenile Salmon Use of Nearshore Habitats in San Juan County

Tina Wyllie-Echeverria

Collaboration with Eric Beamer and Kurt Fresh (tows), and many students/volunteers

1950-2006, about 50 sites around the San Juans have been sampled and have found juvenile salmon.  Of 656km of SJI shoreline, 430km is rocky beach.  Tow nets (164 tows at 37 sites, monthly from Apr-Sep) caught juveniles of 5 species and 785k fish overall; 657 beach seins at 27 sites caught juveniles of 5 species and~100k fish overall.

% of catch (seine, tow): sculpins (29%,0%); smelt, sand lance, herring (17%, 98%); salmon (16%, 0%?); surf perch (16%, 0%); gadids (7%, <1%); hexagrammids (lingcod, kelp greenling 2%, <1%).

Chinook mostly present apr-sept (mostly august), about 2 months later than in Skagit estuary.  Juvenile salmon  are common Mar-Sept and were present year-round in all environments at all sites.

Along west side, catch was ~10x higher near Eagle Point than near Henry Island, but Rosario side was generally dominant (especially herring).

Nearshore Chinook use in Strait of Juan de Fuca

Anne Shaffer

Focus on central and western strait, trying to identify restoration actions associated with dam removal on the Elwha.   The area is also an important migratory corridor, ultimately seeing about 85% of the outflow from the Salish Sea.  430 seines in many habitat types over last 18 months, 16 snorkel surveys, 2 yrs surf smelt spawn surveys.

Embayed shorelines, spits, and bluffs have higher diversity than lower rivers, but only at drift-cell scale.  Took genetic samples to see if PS chinook use the area.  63 juvenile chinook, 46% came from Elwha/Dungeness, 44% from Columbia, and 10% from inland WA.  Smelt densities change dramatically between years, usually peaking between April and September.   Kelp beds have higher densities of fish.

Fish Response to Shoreline Habitats

Jason Toft

Comparing along-shore snorkel surveys between cobble beach, sand beach, rip rap, deep rip rap, and overwater structure.

We see biggest difference when you have sub-tidal modifications.

Gastric lavage of juvenile Chinook: insects dominate in shallow habitats, plankton/benthic dominate when shoreline is steep.

At Olympic sculpture park, we looked at pocket beach and subtidal bench before and after construction.

Pocket beach example:

  • 94% juvenile salmon and few predators
  • lots of post-larval fish ~3cm

Duwamish turning basin example:

  • Chinook only use deeper portions; chum use both shallow and deep

Seahurst park (invertebrate example) where they took away a sea wall:

  • higher diversity in first year, though abundance is still lower than reference site

Nearshore distribution and size-structure of juvenile salmon and forage fishfrom the observations and modeling on watersheds, marine waters, and marine biota. These talks will focus

Elisabeth Duffy*, David Beauchamp

Juvenile salmon are moving through Puget Sound (PS) from April-July.  By end of July most have made it to the deep ocean.  Percent of fish from hatcheries is about 50% in N PS and 90% in S PS.

Nearshore fish comunity: herring and perch up north, hatchery salmon dominate in the south; salmon are 30-130mm, herring 130-160cm, sand lance 100-130cm; north diets dominated by insects, south diet by crab larvae, euphausids; predators drive early mortality and salmonids dominate (cutthroat target smallest juveniles)

Overall, marine survival has been really low, and lowest during pink years.  The bigger the fish are in July, the better their marine survival.

Where do we go from here?

  • synthesize data across Salish Sea
  • Prey supply (zooplankton) is a big data gap

Blackmouth fishing in the San Juans and beyond

Last weekend was the beginning of blackmouth season in Marine Area 7 (the San Juan Archipelago and vicinity).  I’ve been wondering if WDFW should encourage fishing for Puget Sound resident Chinook as there are some indications that resident Chinook are loading up J pod with persistent pollutants, while decreasing fishing pressure on Fraser River Chinook (their summertime favorite) as well as whatever less-polluted fish they eat during the wintertime.

The appended WDFW email announcement just came out and essentially encourages blackmouth fishing.  How many blackmouth of what ages (and pollutant levels) get harvested by humans each year?  How many are harvested by killer whales?  What is WDFW doing to get clean fish into the SRKWs?  What else could we do as a society.

Puget Sound anglers are currently abuzz about salmon fishing in Marine Area 7, where the first weekend of the blackmouth season yielded a fish for every two rods. The fishery continues daily through April 15, under regulations outlined in the state Fishing in Washington  rules pamphlet.

“Blackmouth fishing in the San Juans is off to a smoking start,” said Steve Thiesfeld, a fish biologist for the Washington Department of Fish and Wildlife (WDFW).  “Over the last several years, the Islands have been a great place to go blackmouth fishing.”

Four more areas of Puget Sound will open to fishing for resident chinook Feb. 14, including marine areas 5 (Sekiu), 6 (eastern Strait of Juan de Fuca), 11 (Tacoma-Vashon) and 12 (Hood Canal).

1/21/09 announcement said:

Blackmouth salmon:   One in three anglers have been catching hatchery chinook in Marine Area 8-1 (Deception Pass to Skagit Bay) in Puget Sound.  Marine Area 7 (San Juan Islands) opens Feb. 1 and marine areas 5, 6, 11 and 12 open to blackmouth fishing Feb. 14.

Northern resident bounty this year?

This just in from salmonuniversity.com:

Forecasts are great for the Queen Charlotte’s and the Nushagak in 2009

Canadian Fisheries claims the water temperature is the coldest in 11 years and the ocean conditions are perfect for setting up huge runs of returning Chinook and Coho for 2009.  In 2005 the Nushagak had over 300k returning Chinook – this year will be the returning fish from that run, coupled with terrific ocean conditions equates to a banner year in 2009

What does this mean for the southern residents?

The 6th H of salmon abundance: Heat

The clipping below is from a Daily Astorian article on an EPA report regarding global warming’s potential influence on Northwest salmon.  Of most import for killer whale conservationists are the implications of what James Martin calls a “perfect storm” for salmon: low snow pack with low, warm flows in the summer.
Martin provides a nice quote regarding the economic impact of such a storm:
“In Oregon, Washington and Idaho, it’s a 35,000-job industry, and it’s worth $3 billion dollars per year,” he said. “So it’s a lot more than just a hobby. There’s a lot at stake.”
That’s about 30x the $100M estimate of ecotourism value associated  with the southern residents.
The article also mentions a report co-authored by Martin and Patty Glick called A Great Wave Rising. Dan Drais of Save Our Wild Salmon recently handed me a copy and it looks like an admirable, balanced attempt to bring climate science into the on-going struggle to devise a legal federal plan for recovering endangered fish in the Columbia/Snake basin.  I particularly like that it is rich in reputable citations with which I (and global warming skeptics) can understand the uncertainties in the trends and projections.
A quote from Glick suggests that “Heat” should be added to the 4 H’s that govern northwest salmon abundance: harvest, hatcheries, hydropower, and habitat.  But just last night, David Montogomery claimed the 5th H should be “History” — the history of salmon-human interactions, particularly in Britain and in the Northeast U.S.  So, for me “Heat” has become the 6th H and I’m even more convinced that salmon recovery (linked with killer whale recovery) is one of the most complex, grand environmental challenges of our time.
clipped from www.dailyastorian.com

12/26/2008 11:21:00 AM
The EPA warns that climate change threatens Oregon’s cold-water fish populations
By Michael Burkett
East Oregonian Publishing Group
U.S. Environmental Protection Agency’s report on global warming
contains some dire predictions for Oregon’s time-honored reputation as a Mecca for coldwater fishermen.
Released July 17, the report warns that the time may come when salmon- and trout-fishing trips are no longer much of an option for residents or visitors. EPA scientists further caution that warming temperatures could lead to a 50- to 100-percent decline in Chinook salmon returns in some areas, since salmon require cool water and are extremely sensitive to increasing temperatures.

Once Oregon is hit by a perfect storm comprised of “a little less snow pack, lower summer water flows and higher summer temperatures, bam! We’ll go over a threshold, and suddenly we won’t have salmon or steelhead or trout,” Martin said.
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